Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs150359083 chr11:34775367 AC/A 1.45E-7 523 41.27 31.5 3.3 KM Plot
KIRC rs150926001 chr6:50863218 T/TTA 2.96E-5 524 39.53 43.55 15.3 KM Plot
KIRC rs1564030 chr2:6620810 G/C 1.85E-5 514 38.52 45.77 10.97 KM Plot
KIRC rs1564385 chr2:168094062 T/C 4.09E-8 524 40 32.42 3.37 KM Plot
KIRC rs1576084 chr6:20284537 C/G 9.0E-9 525 9.02 35.77 43.3 KM Plot
KIRC rs16837507 chr3:126189395 A/G 1.23E-12 527 39.62 35.35 2.17 KM Plot
KIRC rs16853313 chr2:168103701 A/G 1.04E-7 527 40 37.03 3.37 KM Plot
KIRC rs16865179 chr2:6615805 G/A 1.04E-5 520 39.08 47.87 10.97 KM Plot
KIRC rs16891235 chr6:26017542 T/C 3.16E-9 517 41.27 37.03 3.37 KM Plot
KIRC rs16891261 chr6:26062631 A/G 6.21E-9 521 41.27 35.4 3.37 KM Plot
KIRC rs16891264 chr6:26072445 C/T 1.8E-9 527 3.37 33.93 41.27 KM Plot
KIRC rs16891315 chr6:26111756 T/C 1.47E-8 510 42.2 36.95 3.37 KM Plot
KIRC rs16924648 chr9:833828 G/A 1.02E-5 511 39.1 43.3 18.15 KM Plot
KIRC rs16926116 chr11:34777238 C/T 1.66E-7 517 41.27 32.23 3.3 KM Plot
KIRC rs17016790 chr12:89779769 T/C 5.55E-16 517 40 34.83 1.97 KM Plot